Bioconductor Interaction term

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deseq2 multifactor interaction term gender effect 3-factors

updated 5.2 years ago by Michael Love 42k • written 5.2 years ago by kmu004 ▴ 50

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790

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deseq2 interaction term

5.8 years ago guipagui • 0

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deseq2 interaction term

updated 5.8 years ago by Michael Love 42k • written 5.8 years ago by Cece • 0

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deseq2 extracting contrasts rnaseq interaction term

updated 6.0 years ago by swbarnes2 ★ 1.4k • written 6.0 years ago by Amit Indap ▴ 10

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1.3k

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deseq2 lfcshrink interaction term

updated 6.1 years ago by Michael Love 42k • written 6.1 years ago by krutherford • 0

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deseq2 interaction term multiple groups betaprior

updated 6.2 years ago by Michael Love 42k • written 6.2 years ago by tarun2 • 0

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deseq2 multiple factor design interaction term

updated 6.3 years ago by Michael Love 42k • written 6.3 years ago by Giovanni Bacci • 0

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1.5k

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deseq2 design interaction term R

6.3 years ago briverog • 0

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deseq2 ANOVA design interaction term

updated 6.4 years ago by Michael Love 42k • written 6.4 years ago by tarun2 • 0

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deseq2 sva interaction term grouping variable deseq

6.4 years ago kevin.kingsland ▴ 70

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deseq2 interaction term

updated 6.8 years ago by Michael Love 42k • written 6.8 years ago by sofiagreen72211 ▴ 10

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deseq2 multiple factor design nested design interaction term

updated 7.1 years ago by Michael Love 42k • written 7.1 years ago by zahra.aboukhalil • 0

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2.2k

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deseq2 deseq limma interaction term

updated 7.2 years ago by Simon Anders ★ 3.7k • written 7.2 years ago by sbcn ▴ 80

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Comment: Trouble Installing DADA2 (warning: R new user) by shepherl 3.9k

As far as this ERROR for Bioc requires R version, Bioconductor is closely tied to an R release. Depending if you tried to use a premade s…

Answer: LRT test for different timepoints (one tissue types vs. many tissue types) by Michael Love 42k

No, this is a contrast of estimated coefficient (e.g. the Wald test).

Comment: Ranking the GSEA Results by Michael Love 42k

Got it. So then I'll take off DESeq2 as its mostly a downstream question. You may need to direct the fgsea developer to the thread. When yo…

Comment: Ranking the GSEA Results by V_Vibes • 0

I have actually used the "fgsea" Bioconductor package which is used for GSEA. Thanks for pointing that out. I have edited that in the origi…

Comment: Ranking the GSEA Results by V_Vibes • 0

The idea was inspired by people ranking the DEGs for preranked GSEA using their log2FC * (-log10 p-value). Also, the GSEA results I am gett…

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Error in `$<-.data.frame`(`*tmp*`, "dispersion", value = NA)

ChiPseeker package: plotAnnoPie identical colors for peakAnnoList features

Comment: How to get the DMR?

Answer: Using both voom and removeBatchEffect, will they double adjust the data or is it

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